| SUNDAY 18.6. |
| 12.00 |
Registration starts |
| 18.00 |
Get-together |
| 19.30 |
Welcome (Merja Penttilä, VTT Technical Research Centre of Finland, Finland) |
| |
KEYNOTE LECTURES |
| 19.45 |
Theoretical and practical systems biology
(Pertteli Varpela, Medicel Ltd and University of Helsinki, Finland) |
| 20.25 |
New 'dimensions' in genome annotation
(Bernhard Palsson, Department of Bioengineering, UCSD, USA) |
| |
MONDAY 19.6.
Comparative Genomics & Genome-wide analyses
(Chairs: Stefan Hohmann, Sweden and Kalervo Hiltunen, Finland) |
| 9.00 |
Yeasts illustrate the mechanisms of eukaryotic genome evolution
(Bernard Dujon, Institut Pasteur, Paris, France) |
| 9.40 |
Integrative genomics of fungi
(James Galagan, The Broad Institute of MIT and Harvard, USA) |
| 10.20 |
Genome-wide identification and analysis of biological systems in yeast
(Stephen Oliver, The University of Manchester, UK) |
| 11.00 |
Coffee |
| 11.25 |
Further exploration of the budding yeast transcriptome
(Takashi Ito, University of Tokyo, Japan) |
| 12.05 |
Understanding the quantitative physiology of a eukaryotic cell fate decision system
(Roger Brent, The Molecular Sciences Institute, Berkeley, USA) |
| 12.45 |
Lunch
|
Omics data & Cell Function
(Chairs: Markus Herrgård, USA and Peter Philippsen, Switzerland) |
| 14.10 |
Evolutionary origin of novel short transcripts in S. cerevisiae
(Eugenio Mancera, European Molecular Biology Laboratory, Germany) |
| 14.30 |
Conditional perturbations for GDP-mannose related genes in S. cerevisiae
(Risto Renkonen, Biomedicum, University of Helsinki, Finland) |
| 14.50 |
Interactive Proteomics of Membrane Protein Assemblies
(Igor Stagljar, University of Toronto, Canada) |
| 15.10 |
Vertical genomics: fast dynamic response of central metabolism and glycolytic genes to glucose availability in S. cerevisiae
(André Canelas, Delft University of Technology, The Netherlands) |
| 15.30 |
Determination of the transcriptional networks controlling pseudohyphal growth in Saccharomyces cerevisiae and their comparison to related yeast species
(Anthony Borneman, The Australian Wine Research Institute, Australia) |
| 15.50 |
The time-dependent response of S. cerevisiae to oxidative stress
(Vladimir Shulaev, Virginia Bioinformatics Institute, USA) |
| 16.10 |
Coffee |
| 16.30 |
Poster session I |
| 18.30 |
Dinner |
| 20.00 |
Workshops: New -omics approaches &
bioinformatics
(Chairs: Igor Stalgljar, Canada and David Ussery, Denmark) |
| 21.30 |
Sauna |
| |
|
TUESDAY 20.6.
Modelling: Theory & Practise
(Chairs: Matej Oresic, Finland and Masanori Arita, Japan) |
| 9.00 |
Dynamic modeling of cAMP signal transduction in Saccharomyces cerevisiae
(Matthias Reuss, Institute of Biochemical Engineering, Germany) |
| 9.40 |
Construction and analysis of kinetic models of Saccharomyces cerevisiae; applications to glycolysis, cell cycle and mixed populations studies
(Jacky Snoep, University of Stellenbosch, South Africa) |
| 10.20 |
Metabolic control analysis of yeast central carbon metabolism under uncertainty
(Vassily Hatzimanikatis, Northwestern University, Evanston, USA) |
| 11.00 |
Coffee |
| 11.25 |
Dynamic modeling of yeast cell stress response
(Edda Klipp, Max Planck Institute for Molecular Genetics, Berlin, Germany) |
| 12.05 |
Exit from mitosis in budding yeast: models and experiments
(Bela Novák, Hungarian Academy of Sciences, Hungary) |
| 12.45 |
Lunch
|
Modelling & Cell Function
(Chairs: Uwe Sauer, Switzerland and Friedrich Srienc, USA) |
| 14.10 |
Physiological response of Saccharomyces cerevisiae to change in oxygen provision
(Hannu Maaheimo, VTT Technical Research Centre of Finland, Finland) |
| 14.30 |
Monitoring fast dynamic combined response metabolome and transcriptome of S. cerevisiae to a glucose pulse
(Made Kresnowati, Delft University of Technology, The Netherlands) |
| 14.50 |
Automated flow cytometry for studying population dynamics
(Friedrich Srienc, BioTechnology Institute, University of Minnesota, USA) |
| 15.10 |
Deciphering condition dependent metabolic regulation in Saccharomyces cerevisiae by 13C flux analysis
(Lars Blank, University of Dortmund, Germany) |
| 15.30 |
Functional implications of changes in gene expression
(Jildau Bouwman, Vrije Universiteit, The Netherlands) |
| 15.50 |
Comparative computational modelling reveals a novel logic of tor signalling in yeast
(Joerg Stelling, Institute of Molecular Systems Biology, ETH Zurich, Switzerland) |
| 16.10 |
Coffee |
| 16.30 |
Poster session II |
| 18.30 |
Dinner |
| 20.00 |
Workshop: Quantitative data acquisition
& modelling
(Chairs: Pedro Mendes, USA and Douglas Kell, UK) |
| 21.30 |
Sauna |
| |
|
WEDNESDAY 21.6.
Systems Biology Applications (Chairs: Lilia Alberghina,
Italy and Hans Westerhoff, The Netherlands/UK) |
| 8.30 |
Adaptation of Saccharomyces cerevisiae to a changing environment:
a vertical genomics approach
(Han de Winde, Delft University of Technology, Delt, The Netherlands) |
| 9.05 |
Application of system biology on brewer’s yeast
(Naoyuki Kobayashi, Sapporo Breweries Ltd, Japan) |
| 9.45 |
Chemical combinations as multi-target therapeutics and biological probes
(Joseph Lehar, CombinatoRx Inc. and Boston University, USA) |
| 10.20 |
Coffee |
| 10.40 |
Reporter features: A tool for mapping of global control in metabolism through model driven analysis of ome data
(Jens Nielsen, Technical University of Denmark, Denmark) |
| 11.20 |
Panel: Industrial expectations
of systems biology
(Chairs: Hans van Dijken, The Netherlands and Pirkko Suominen, USA) |
| 12.20 |
Lunch
|
Physiology & Metabolic Engineering
(Chairs: Sylvie Dequin, France and Laura Ruohonen, Finland) |
| 13.20 |
Metabolic engineering of yeasts for production of bulk fermentation products from xylose: ethanol and lactic acid
(Pirkko Suominen, NatureWorks LLC, Minnetonka, USA) |
| 13.40 |
L-ascorbic acid production from D-glucose in metabolic engineered Saccharomyces cerevisiae and its effect on strain robustness
(Paola Branduardi, University of Milano-Bicocca, Italy) |
| 14.00 |
Metabolic engineering of S. cerevisiae for overproduction of succinic acid
(Jose Manuel Otero, Technical University of Denmark, Denmark) |
| 14.20 |
Comparative 13C flux analysis of two Saccharomyces cerevisiae strains reveals substantial differences in the flux through the PP pathway
(Carole Camarasa, UMR-Sciences pour l’Enologie, INRA, France) |
| 14.40 |
Zero growth product formation in Saccharomyces cerevisiae
(Leonie van Dijk, Delft University of Technology, The Netherlands) |
| 15.00 |
KEYNOTE LECTURE :
Biological robustness
(Hiroaki Kitano, Sony Computer Science Laboratories Inc, Japan) |
| 15.40 |
Concluding remarks
(Merja Penttilä, VTT Technical Research Centre of Finland, Finland) |
| 16.00 |
Coffee |
| 17.30 |
Boat trip and sightseeing at the forstress island Suomenlinna |
| 19.00 |
Dinner at the Restaurant
Walhalla at the forstress island Suomenlinna
|